NlmeEngineExtraParams : Defines all extra engine parameters

Slots

isPopulation: is this a population model
method: what engine to use QRPEM = 1|IT2S-EM = 2|FOCE-LB = 3|FO = 4| LAPLACIAN = 5|NAIVE-POOLED = 6 The only difference between FOCE-ELS and Laplacian is the setup for the other parameter "PARAMS_FOCEHESE". If FOCE-ELS is chosen, PARAMS_FOCEHESE = 1. If Laplacian is chosen, PARAMS_FOCEHESE = 0. PARAMS_FOCEHESE arg should not be provided, and is controlled by the method.
numIterations: maximum number of iterations
odeToUse: What ODE to use common : ODE_STIFF=2|ODE_NON_STIFF=3|ODE_AUTO_DETECT=5|MATRIX_EXP=6 others : ODE_LSODE=1|ODE_LSODE_ANA_JAC=2|ODE_RK=3|ODE_LSODA=4| ODE_LSODA_ANA_JAC=5|MATRIX_EXP=6
anagrad: n 0, or 1 to allow analytic gradients (default 0)
xnp: n number of nonparametric generations (or 0)
xrestart: n 0, or 1 to restart
xnorderagq: n number of AGQ points per axis (or 0)
xfocehess: n 0 for numerical hessian, 1 for foce
xstderr: n 0=none, 1=central, 2=forward
xlameth: n LAGL Method 1, 2, or 3
xlandig: n LAGL nDigit
xlatol: n LAGL tolerance
xblndig: n BLUP Method 1, 2, or 3
xblndig: n BLUP nDigit
xbltol: n BLUP tolerance
xpcwresnrep: n number of reps for PCWRES simulation
xisample: n number of samples for QRPEM
xmapassist: n 0 (default) or >0, to enable map assist and specify periodicity
xmapnp: n map naive-pool control
ximpsampdof: n importance sampling control (-3 to 30) NORMAL=0 DBL_EXP=1 DIRECT=2 MIXTURE_2=-2 MIXTURE_3=-3
xmcpem: n 0 for QRPEM, 1 for MCPEM
xsirsamp: n number of SIR samples
xburnin: n number of burn-in samples
xnonomegaburn: n 0 (default) or 1, to use non-omega burn-in
xnoburn: n 0 (default) or 1, to suppress burn-in
xstartfromsavedposteriors: n 0 (default) or 1, to start from saved posteriors
xaccratio: n acceptance ratio
xscramble: n 0 for None, 1 for Owen, 2 for Faure-Tezuka
pardern: n partial derivative # steps
parderd: n partial derivative delta
logtran: n 0, or 1(default) to enable log-translate of data

Examples

param <- NlmeEngineExtraParams(
  method = 3,
  numIterations = 1000
)
param <- NlmeEngineExtraParams(
  method = 1,
  numIterations = 300
)
param <- NlmeEngineExtraParams(
  method = 1,
  numIterations = 300,
  isPopulation = TRUE,
  odeToUse = 2
)