Examples

The following examples are provided in pyDarwin 2.0.0 to help you get started. Examples are organized into folders with all required files available for execution.

• Example 1: PK Model, Trivial Exhaustive Search.

• Example 2: PK Model 2, Simulation model by GP with Python code.

• Example 3: PK Model, ODE model.

• Example 4: PK Model, DMAG by GA with post-run R code.

• Example 5: PK Model, DMAG by GP.

• Example 6: PK Model, DMAG by RF with post-run Python code.

• Example 7: PK Model, Exhaustive Omega Search.

• Example 8: Emax Model, PSO.

To get started, download and unzip the Examples folders from the following link.

After setting up your Python virtual environment and installing pyDarwin, you can simply specify the path to the one of the Example[n] folders in the command below and the search will begin:

python -m darwin.run_search_in_folder ./Example1

Note

You may need to edit the path to NONMEM executable e.g., nmfe_path in the options.json file inside each of the example folders to point to the correct location on your machine.