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Release Notes

release_notes.Rmd

DarwinReporter 2.0.0 - October, 2024

What’s New

  • Shiny UI library migrated from shinymaterial to bslib.
  • NPD and NPDE diagnostic plots are now included for NLME-Engine key models.

DarwinReporter 1.0.1 - May, 2024

What’s New

  • For a NONMEM search, $TABLE statements are no longer required in template.txt in order to run Certara.DarwinReporter::darwinReportUI(). If $TABLE statements are missing in the template file (and subsequently not generated in key model run folders), users can still launch the Shiny application and can view parameter estimates tables and generate Darwin search plots. Note, xpose related GOF plots will be unavailable if no $TABLE files are specified.

DarwinReporter 1.0.0 - November, 2023

What’s New

  • Certara.DarwinReporter is an R package for importing and analyzing output files from a pyDarwin automated model search. Use the function darwin_data() to initialize the darwin_data class object, to be supplied to plotting functions and the Shiny application for interactive analysis and RMarkdown report generation.

  • The function fitness_vs_iteration() has been made available to plot mean/min fitness by iteration.

  • The function fitness_penalties_vs_iteration() has been made available to plot the composition of fitness (e.g., OFV and penalties) by iteration.

  • A Shiny application is provided to create, customize, and generate the underlying code for model diagnostics plots and tables used to evaluate a pyDarwin automated model search. The Shiny application can be run with the function darwinReportUI().

  • Supports analysis of either NLME or NONMEM pyDarwin automated model search output.