An R package for parameter estimate tables.
Installation
This package is not yet on CRAN. To install the latest development version directly from GitHub:
require(remotes)
devtools::install_github("certara/pmxpartabc")Usage
library(pmxpartabc)
output <- parframe2setup(run_dir = file.path(system.file(package = "pmxpartabc"), "examples"),
run_prefix = "run",
runno = "5",
bootstrap = TRUE,
run_dir.boot = file.path(system.file(package = "pmxpartabc"), "examples", "bootstrap_dir2"),
runno.boot = "5boot",
conf.level = 0.95,
min_suc = TRUE)
tab <- parframe(out=output[[1]], meta=output[[2]], bootstrap = TRUE)
tab1 <- pmxpartab(tab, output[[2]], columns=c(value="Estimate", rse="RSE%", ci95="95%CI", shrinkage="Shrinkage"))
print(tab1)| Parameter | Estimate | RSE% | 95%CI | Shrinkage |
|---|---|---|---|---|
| Typical Values | ||||
| Central Volume (L) | 24.7 | 8.29 | 21.7 – 26.8 | |
| Clearance (L/h) | 0.659 | 249 | 0.303 – 0.759 | |
| Peripheral Volume (L) | 76.5 | 195 | 68.4 – 115 | |
| Intercompartimental Clearance (L/h) | 1.83 | 34.7 | 1.83 – 1.95 | |
| Absorption Rate (h-1) | 0.653 | 52.7 | 0.559 – 0.790 | |
| Between Subject Variability | ||||
| On Volume | 0.169 | 22.2 | 0.0999 – 0.219 | 0.300% |
| Correlation On Clearance,On Volume | 0.140 | 199 | 0.0928 – 0.336 | |
| On Clearance | 0.358 | 282 | 0.234 – 1.62 | 1.30% |
| Residual Error | ||||
| Proportional Error (-) | 0.102 | 147 | 0.0977 – 0.115 | 20.1% |
